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Software

IMOD

A package for tomographic reconstruction using fiducial markers and contour-based modeling.

Bsoft

A package for the manipulation and analysis of scientific 3D images, structure factors for crystallography, atomic models and protein sequences.

Peach

A distributed processing system for heterogenous clusters of computers

Priism

Package for tomographic reconstruction using fiducial markers.

PFT3DR

Versions 2 of PFT and EM3DR originally developed in Tim Baker's group at Purdue.

Dino

Program to visualize molecular structures and isosurfaces of reconstructions.

Amira

a commercial package on 3D visualization and volume modeling

Chimera

an extensible, interactive molecular visualization and analysis
system by UCSF

EMAN

software for Single Particle Analysis and Electron Micrograph Analysis