Publications – Technology Development

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2017

bioRxiv

Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells

Carter SD, Mageswaran SK, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z, Jensen GJ

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2016

Methods in Microbiology

Electron cryotomography

Oikonomou CM, Swulius MT, Briegel A, Beeby M, Yao Q, Chang Y-W, Jensen GJ

(proof available here)

Methods in Molecular Biology

Coarse-Grained Molecular Dynamics Simulations of the Bacterial Cell Wall

Nguyen LT, Gumbart JC, Jensen GJ

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2015

arXiv

De novo visual proteomics in single cells through pattern mining

Xu M, Tocheva EI, Chang Y-W, Jensen GJ, Alber F

Journal of Structural Biology

The Caltech Tomography Database and Automatic Processing Pipeline

Ding HJ, Oikonomou, CM, Jensen GJ

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2014

Nature Methods

Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography

Chang YW, Chen S, Tocheva EI, Treuner-Lange A, Löbach S, Søgaard-Andersen L, Jensen GJ

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2013

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2012

Nature Structural and Molecular Biology

Data management challenges in three-dimensional EM

Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mostronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-Garcia E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Keywegt GJ

Quarterly Reviews of Biophysics

Electron Tomography of Cells

Gan L, Jensen GJ

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2010

Methods in Enzymology

Correcting for the ewald sphere in high-resolution single-particle reconstructions

Leong PA, Yu X, Zhou ZH, Jensen GJ

Methods in Enzymology

Cryo-EM, Part B: 3-D Reconstruction

Jensen GJ

Methods in Enzymology

Correlated light and electron cryo-microscopy

Briegel A, Chen S, Koster AJ, Plitzko JM, Schwartz CL, Jensen GJ

Methods in Enzymology

Plunge freezing for electron cryomicroscopy

Dobro MJ, Melanson LA, Jensen GJ, McDowall AW

JoVE

Electron cryotomography of bacterial cells

Chen S, McDowall A, Dobro MJ, Briegel A, Ladinsky M, Shi J, Tocheva EI, Beeby M, Pilhofer M, Ding HJ, Li Z, Gan L, Morris DM, Jensen GJ

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2009

Microscopy and Microanalysis

Nanogold as a specific marker for electron cryotomography

He Y, Jensen GJ, Bjorkman PJ

Journal of Structural Biology

Fully automated, sequential tilt-series acquisition with Leginon

Suloway C, Shi J, Cheng A, Pulokas J, Carragher B, Potter CS, Zheng SQ, Agard DA, Jensen GJ

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2008

Microscopy and Microanalysis

An improved cryogen for plunge freezing

Tivol WF, Briegel A, Jensen GJ

Journal of Structural Biology

Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography

Lee E, Fahimian BP, Iancu CV, Suloway C, Murphy GE, Wright ER, Castaño-Díez D, Jensen GJ, Miao J

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2006

Nature Protocols

Electron cryotomography sample preparation using the Vitrobot

Iancu CV, Tivol WF, Schooler JB, Dias DP, Henderson GP, Murphy GE, Wright ER, Li Z, Yu Z, Briegel A, Gan L, He Y, Jensen GJ

Journal of the American Chemical Society

Rigid, specific, and discrete gold nanoparticle/antibody conjugates

Ackerson CJ, Jadzinsky PD, Jensen GJ, Kornberg RD

Journal of Structural Biology

Observations on the behavior of vitreous ice at approximately 82 and approximately 12 K

Wright ER, Iancu CV, Tivol WF, Jensen GJ

Journal of Structural Biology

A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography

Iancu CV, Wright ER, Heymann JB, Jensen GJ

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2005

Journal of Structural Biology

A “flip-flop” rotation stage for routine dual-axis electron cryotomography

Iancu CV, Wright ER, Benjamin J, Tivol WF, Dias DP, Murphy GE, Morrison RC, Heymann JB, Jensen GJ