eLife
A cryogenic, coincident fluorescence, electron and ion beam microscope
Boltje DB, Hoogenboom JP, Jakobi AJ, Jensen GJ, Jonker CTH, Kaag MJ, Koster AJ, Last MGF, de Agrela Pinto C, Plitzko JM, Raunser S, Tacke S, Wang Z, van der Wee EB, Wepf R, den Hoedt S
Journal of Structural Biology: X
Subtomogram averaging for biophysical analysis and supramolecular context
Metskas LA, Wilfong R, Jensen GJ
Journal of Structural Biology
Montage electron tomography of vitrified specimens
Peck A, Carter SD, Mai H, Chen S, Burt A, Jensen GJ
Communications Biology
UVC inactivation of pathogenic samples suitable for cryo-EM analysis
Depelteau JS, Renault L, Althof N, Cassidy CK, Mendonça LM, Jensen GJ, Resch GP, Briegel A
PNAS
Generation of ordered protein assemblies using rigid three-body fusion
Vulovic I, Yao Q*, Park Y-J*, Courbet A, Norris A, Busch F, Sahasrabuddhe A, Merten H, Sahtoe DD, Ueda G, Fallas JA, Weaver SJ, Hsia Y, Langan RA, Plückthun A, Wysocki VH, Veesler D, Jensen GJ, Baker D
Acta Crystallographica Section D
Challenges in solving structures from radiation-damaged tomograms of protein nanocrystals assessed by simulation
Peck A, Yao Q, Brewster AS, Zwart PH, Heumann JM, Sauter NK, Jensen GJ
Journal of Structural Biology
Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition
Chreifi G, Chen S, Jensen GJ
Journal of Molecular Biology
Moltemplate: a tool for coarse-grained modeling of complex biological matter and soft condensed matter physics
Jewett AI+, Stelter D, Lambert J, Saladi SM, Roscioni OM, Ricci M, Autin L, Maritan M, Bashusqeh SM, Keyes T, Dame RT, Shea J-E, Jensen GJ, Goodsell DS+
Gateways 2019 (Conference)
DDX-Interface: A factory of interoperable scientific gateways
James A, Chacon R, Buddenhagen J, Ortega DR, Rees-Lee P, Jensen G, James DR
Structure
Qualitative analyses of polishing and precoating FIB milled crystals for MicroED
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
bioRxiv
Regular Architecture (RegArch): A standard expression language for describing protein architectures
Ortega DR, Jensen GJ
Structure
Fusion of DARPin to aldolase enables visualization of small protein by cryoEM
Yao Q*, Weaver SJ*, Mock J-Y, Jensen GJ
PLOS One
ETDB-Caltech: a blockchain-based distributed public database for electron tomography
Ortega DR, Oikonomou CM, Ding HJ, Rees-Lee P, Alexandria, Jensen GJ
Structure
De novo structural pattern mining in cellular electron cryotomograms
Xu M, Singla J, Tocheva EI, Chang Y-W, Stevens RC, Jensen GJ, Alber F
Structure
Collection of continuous rotation MicroED data from ion beam-milled crystals of any size
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
Journal of Structural Biology
Rapid tilt-series acquisition for electron cryotomography
Chreifi G*, Chen S*, Metskas LA, Kaplan M, Jensen GJ
Journal of Structural Biology
Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells
Carter SD*, Mageswaran SK*, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z+, Jensen GJ+
Journal of Structural Biology
Best practices for managing large cryoEM facilities
Alewijnse B, Ashton AW, Chambers MG, Chen S, Cheng A, Ebrahim M, Eng E, Hagen WJH, Koster AJ, Lopez CS, Lukoyanova N, Ortega J, Renault L, Reyntjens S, Rice WJ, Scapin G, Schrijver R, Siebert A, Stagg SM, Grum-Tokars V, Wright ER, Wu S, Yu Z, Zhou ZH, Carragher B, Potter CS
Angewandte Chemie International Edition
Photon-induced near-field electron microscopy (PINEM) of eukaryotic cells
Kaplan M, Yoo BK, Tang J+, Karam T, Liao B, Majumdar D, Baltimore D, Jensen G+, Zewail A
(top)
2016
Methods in Microbiology
Electron cryotomography
Oikonomou CM, Swulius MT, Briegel A, Beeby M, Yao Q, Chang Y-W, Jensen GJ
Methods in Molecular Biology
Coarse-Grained Molecular Dynamics Simulations of the Bacterial Cell Wall
Nguyen LT, Gumbart JC, Jensen GJ
Journal of Structural Biology
The Caltech Tomography Database and Automatic Processing Pipeline
Ding HJ, Oikonomou, CM, Jensen GJ
Nature Methods
Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography
Chang YW, Chen S, Tocheva EI, Treuner-Lange A, Löbach S, Søgaard-Andersen L, Jensen GJ
Journal of Structural Biology
The challenge of determining handedness in electron tomography and the use of DNA origami gold nanoparticle helices as molecular standards
Briegel A*, Pilhofer M*, Mastronarde DN, Jensen GJ
Nature Structural and Molecular Biology
Data management challenges in three-dimensional EM
Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mostronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-Garcia E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Keywegt GJ
Methods in Enzymology
Correcting for the Ewald sphere in high-resolution single-particle reconstructions
Leong PA, Yu X, Zhou ZH, Jensen GJ
Methods in Enzymology
A description of the instruments, samples, protocols, and analyses that belong to the growing field of cryo-EM
Jensen GJ
Methods in Enzymology
Correlated light and electron cryo-microscopy
Briegel A, Chen S, Koster AJ, Plitzko JM, Schwartz CL, Jensen GJ
Methods in Enzymology
Plunge freezing for electron cryomicroscopy
Dobro MJ, Melanson LA, Jensen GJ, McDowall AW
JoVE
Electron cryotomography of bacterial cells
Chen S, McDowall A, Dobro MJ, Briegel A, Ladinsky M, Shi J, Tocheva EI, Beeby M, Pilhofer M, Ding HJ, Li Z, Gan L, Morris DM, Jensen GJ
Microscopy and Microanalysis
Nanogold as a specific marker for electron cryotomography
He Y, Jensen GJ, Bjorkman PJ
Journal of Structural Biology
Fully automated, sequential tilt-series acquisition with Leginon
Suloway C, Shi J, Cheng A, Pulokas J, Carragher B, Potter CS, Zheng SQ, Agard DA, Jensen GJ
Microscopy and Microanalysis
An improved cryogen for plunge freezing
Tivol WF+, Briegel A, Jensen GJ
Journal of Structural Biology
Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography
Lee E*, Fahimian BP*, Iancu CV, Suloway C, Murphy GE, Wright ER, Castaño-Díez D, Jensen GJ, Miao J
Nature Protocols
Electron cryotomography sample preparation using the Vitrobot
Iancu CV, Tivol WF, Schooler JB, Dias DP, Henderson GP, Murphy GE, Wright ER, Li Z, Yu Z, Briegel A, Gan L, He Y, Jensen GJ
Journal of the American Chemical Society
Rigid, specific, and discrete gold nanoparticle/antibody conjugates
Ackerson CJ, Jadzinsky PD, Jensen GJ, Kornberg RD
Journal of Structural Biology
Observations on the behavior of vitreous ice at approximately 82 and approximately 12 K
Wright ER*, Iancu CV*, Tivol WF, Jensen GJ
Journal of Structural Biology
A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography
Iancu CV, Wright ER, Heymann JB, Jensen GJ
Journal of Structural Biology
A “flip-flop” rotation stage for routine dual-axis electron cryotomography
Iancu CV*, Wright ER*, Benjamin J, Tivol WF, Dias DP, Murphy GE, Morrison RC, Heymann JB, Jensen GJ
Structure
Peach: a simple Perl-based system for distributed computation and its application to cryo-EM data processing
Leong PA*, Heymann JB*, Jensen GJ